Friday, 19 May 2023

Halogens in Drug discovery

Halogens, which include elements such as fluorine, chlorine, bromine, and iodine, play a crucial role in lead optimization for achieving good logD values. LogD is a measure of the lipophilicity or hydrophobicity of a compound, and it is an essential parameter in drug discovery and development.

The incorporation of halogens into drug molecules can significantly impact their physicochemical properties, including lipophilicity, solubility, and bioavailability. Halogens are highly electronegative, which means that they can polarize the bonds they form with other atoms. This polarization effect can increase the lipophilicity of the molecule by making it more hydrophobic, which is desirable for drugs that need to cross cell membranes to reach their target.

In addition to increasing lipophilicity, halogens can also improve the metabolic stability of drug molecules. Halogens can act as electron-withdrawing groups, which can reduce the reactivity of other functional groups in the molecule. This reduced reactivity can prevent unwanted metabolic transformations, such as oxidation or hydrolysis, that can decrease the efficacy of the drug.

Furthermore, halogens can also enhance the potency of drug molecules by increasing their binding affinity to the target protein. Halogens can form strong hydrogen bonds with amino acid residues on the protein surface, which can improve the binding interactions between the drug and its target.

Overall, the strategic incorporation of halogens into drug molecules can greatly impact their pharmacological properties and improve their chances of success in lead optimization. By increasing lipophilicity, metabolic stability, and binding affinity, halogens can help researchers to develop more effective and potent drugs for a range of therapeutic applications.

There are many approved drugs that have been optimized using halogens to improve their activity and properties. Here are some examples:

1. Fluorouracil (5-FU) is a chemotherapy drug used to treat cancer. It contains a fluorine atom, which increases its lipophilicity and metabolic stability, improving its effectiveness.

2. Advair Diskus is a combination inhaler used to treat asthma and chronic obstructive pulmonary disease (COPD). It contains fluticasone propionate, which has a fluorine atom, and salmeterol, which has a chlorine atom. The halogens improve the lipophilicity and potency of the drugs, making them more effective at treating respiratory diseases.

3. Ciprofloxacin is a broad-spectrum antibiotic used to treat infections. It contains a fluorine atom, which enhances its antibacterial activity and improves its pharmacokinetic properties.

4. Zoloft (sertraline) is an antidepressant that contains a chlorine atom. The chlorine atom increases the drug's lipophilicity and metabolic stability, improving its effectiveness at treating depression.

These examples demonstrate the importance of halogens in optimizing drug molecules to improve their activity, potency, and pharmacokinetic properties. The strategic incorporation of halogens can help researchers to develop more effective drugs with fewer side effects, improving patient outcomes.

Wednesday, 17 May 2023

Chiral Alkyl Halides in Drug Discovery

Alkyl halides are a diverse class of compounds that have been used in a variety of applications, including drug discovery. Chiral alkyl halides, which have a chiral center, are of particular interest in drug discovery because they can offer a number of advantages over their achiral counterparts.

One advantage of chiral alkyl halides is that they can be more potent and selective than their achiral counterparts. This is because the chiral center can provide a point of chirality for interaction with a receptor, which can lead to improved binding affinity and selectivity.

Another advantage of chiral alkyl halides is that they can be more stable than their achiral counterparts. This is because the chiral center can provide a barrier to racemization, which is the process by which a chiral compound converts to its racemic (achiral) form.

Finally, chiral alkyl halides can be more easily manufactured than their achiral counterparts. This is because the chiral center can be introduced into the molecule using a variety of methods, including asymmetric synthesis and enzymatic resolution.

As a result of these advantages, chiral alkyl halides have been used in a number of successful drugs, including:

Halothane, an anesthetic
Clindamycin, an antibiotic
Pimecrolimus, an immunosuppressant
Sucralose, a sweetener

Chiral alkyl halides continue to be an important class of compounds in drug discovery, and they are likely to play a role in the development of new and improved drugs in the future.

References
1. "Chiral Alkyl Halides: Underexplored Motifs in Medicine." Frontiers in Pharmacology, vol. 7, 2016, doi:10.3389/fphar.2016.00279.
2. "A Unified and Desymmetric Approach to Chiral Tertiary Alkyl Halides." Journal of the American Chemical Society, vol. 144, no. 1, 2022, pp. 101–104., doi:10.1021/jacs.1c12404.

Sunday, 14 May 2023

TriFluoro compounds in drug discovery

Trifluoro, which is a compound containing three fluorine atoms, has been widely used in lead optimization for drug discovery. There are several advantages and disadvantages to using trifluoro in this process.

Advantages:

1. Increased Lipophilicity: Trifluoro substitution can increase the lipophilicity of a drug molecule, which can improve its ability to cross cell membranes and reach its target. Lipophilicity is an important factor in determining the pharmacokinetic properties of a drug, such as its absorption, distribution, metabolism, and excretion.

2. Enhanced Metabolic Stability: The trifluoro group can increase the metabolic stability of a drug molecule by reducing the reactivity of other functional groups in the molecule. This can prevent unwanted metabolic transformations, such as oxidation or hydrolysis, which can decrease the efficacy of the drug.

3. Improved Binding Affinity: The trifluoro group can improve the binding affinity of a drug molecule to its target protein. The three fluorine atoms can form strong hydrogen bonds with amino acid residues on the protein surface, which can enhance the binding interactions between the drug and its target.

Disadvantages:

1. Toxicity: Trifluoro compounds can be toxic, especially if they are not metabolized properly. The toxic effects of trifluoro compounds can include liver and kidney damage, as well as central nervous system toxicity.

2. Reduced Solubility: Trifluoro substitution can reduce the solubility of a drug molecule, which can decrease its bioavailability. This can make it more difficult to achieve therapeutic concentrations of the drug in the body.

3. Synthetic Complexity: The synthesis of trifluoro compounds can be complex and challenging, which can increase the time and cost required for lead optimization.

In conclusion, trifluoro substitution can provide significant advantages in lead optimization for drug discovery, including increased lipophilicity, enhanced metabolic stability, and improved binding affinity. However, it is important to consider the potential disadvantages of trifluoro substitution, such as toxicity, reduced solubility, and synthetic complexity, when designing and optimizing drug molecules.

Monday, 1 May 2023

Just learned about #PROTACs, a promising new class of drugs that target #protein degradation! Exciting times in the world of drug discovery. ๐Ÿงช๐Ÿ’Š https://t.co/kc3jsYoms5


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May 01, 2023 at 04:00AM

Saturday, 1 April 2023

Don't be afraid to take risks and make mistakes. Learn it, Try it, Train it and Deploy it That's how we grow and learn in computational chemistry! #motivation #research #compchem #chemistry https://t.co/vEtB0medFR


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April 01, 2023 at 04:00AM

Friday, 31 March 2023

Species translation in protein structures refers to the process of aligning the amino acid sequences of two proteins from different species before performing molecular docking studies. https://t.co/4xUyVba2yC


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March 31, 2023 at 02:00AM

Monday, 27 March 2023

Insulin is a protein that is easily broken down by digestive enzymes in the stomach before it can be absorbed into the bloodstream. This makes it difficult for insulin to be absorbed effectively if it is taken orally, which is why it must be injected. #informative #researchideas https://t.co/gCkhm7LbU3


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March 27, 2023 at 07:00AM

Saturday, 25 March 2023

Tautomers are different forms of a compound that exist in equilibrium with each other. They can affect the binding of a compound to a protein target because different tautomers have different chemical properties that can affect how well they interact with the protein. #medchem https://t.co/4c5bwIvA0S


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March 25, 2023 at 03:00AM

Wednesday, 15 March 2023

#UKQSAR interesting talks #data #ml #ai #compchem #drugdiscovery #cheminformatics #qsar #API https://t.co/IKGuskyrMV


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March 15, 2023 at 06:03AM

Tuesday, 14 March 2023

RT @NilsWeskamp: PostDoc opportunity at the interface of academia (Val Gillet, Sheffield) and industry: de novo design, chemical synthesis & evolutionary optimization. Please take a look or share: https://t.co/j9OqzAP5kA


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March 14, 2023 at 06:57AM

Thursday, 9 March 2023

RT @MatthiasRarey: This years program of GRC Computer-Aided Drug Design Conference (Mt.Snow, July 16-21/23) just published: https://t.co/42NoAVXnnH


from Twitter https://twitter.com/giribio

March 09, 2023 at 09:55PM

Saturday, 4 March 2023

Came across an interesting paper on Do's and Don'ts in generating #MachineLearning models & #data handling https://t.co/B9Wnh9N6X1 >Data >Models >Results>Visualization>Analysis >Deploy #ML #AI #Generative #Statistics #ArtificialIntelligence #DataScience #DataAnalytics #QSAR


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March 04, 2023 at 04:47PM

Thursday, 2 March 2023

Future drug discovery would employ a lot of the following technologies: #AI & #ML #CRISPR gene editing #Quantum computing #Nanomedicine 3D printing VR & AR Synthetic biology Precision medicine Human #organoids #Blockchain technology #thread #drugdiscovery #genomics #pharma https://t.co/ghRo2VTS5X


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March 02, 2023 at 12:00AM