Articles to help early drug hunters on understanding drug likeness and lead optimization techniques. Girinath
Friday, 8 September 2023
Exploring the World of Generative Chemistry with Reinforcement Learning: Significance and Limitations
Friday, 26 May 2023
Heterocyclic compounds in Lead Optimisation
Heterocyclic compounds are a diverse class of molecules that play an important role in drug discovery. Heterocycles are defined as molecules that contain one or more atoms other than carbon in their ring structure. The most common heteroatoms found in heterocycles are nitrogen, oxygen, and sulfur.
Heterocyclic compounds have a number of properties that make them attractive for drug discovery. First, heterocyclic compounds are often more potent and selective than their aliphatic counterparts. This is because heterocyclic atoms can interact with the target protein in a variety of ways, including through hydrogen bonding, pi-stacking, and electrostatic interactions. Second, heterocyclic compounds often have improved physicochemical properties, such as solubility and permeability. This makes them more likely to be absorbed and distributed throughout the body. Third, heterocyclic compounds often have reduced toxicity. This is because heterocyclic atoms can help to reduce the interaction of the drug with off-target proteins.
As a result of these properties, heterocyclic compounds are commonly used in lead optimization. Lead optimization is the process of identifying compounds that have the potential to be developed into safe and effective drugs. Heterocyclic compounds are often used in lead optimization because they can provide a number of benefits, including increased potency, selectivity, improved physicochemical properties, and reduced toxicity.
There are a variety of different heterocyclic groups that can be used in lead optimization. Some of the most common include:
- Aromatic heterocycles, such as pyridine, pyrimidine, and thiophene
- Aliphatic heterocycles, such as piperidine, morpholine, and imidazole
- Heterocyclic rings with multiple heteroatoms, such as quinoline and isoquinoline
The choice of the heterocyclic group will depend on the target protein and the desired properties of the drug. For example, aromatic heterocycles are often used for their increased potency and selectivity, while aliphatic heterocycles are often used for their improved physicochemical properties.
Heterocyclic compounds are an important tool in lead optimization. They can provide a number of benefits that can help to improve the chances of developing a safe and effective drug.
Here are some examples of drugs that contain heterocyclic groups:
Nitrogen-containing heterocyclic compounds are not only present as the backbone in several biologically active natural products used as traditional medications or approved prescribed drugs, but some of their synthetic derivatives in different sizes, nowadays are prescribed and market purchasable drugs. The most famous are diazepam, isoniazid, chlorpromazine, metronidazole, barbituric acid, captopril, chloroquinine, azidothymidine and anti-pyrine. Furthermore, most of the vitamins, nucleic acid, enzymes, co-enzymes, hormones, and alkaloids contain N-based heterocycles as scaffolds
These are just a few examples of the many drugs that contain heterocyclic groups. Heterocyclic compounds are an important tool in drug discovery and play a vital role in the development of safe and effective medications.
References
- Heravi MM, Zadsirjan V. Prescribed drugs containing nitrogen heterocycles: an overview. RSC Adv. 2020 Dec 15;10(72):44247-44311. doi: 10.1039/d0ra09198g
- Jampilek J. Heterocycles in Medicinal Chemistry. Molecules. 2019 Oct 25;24(21):3839. doi: 10.3390/molecules24213839.
- Molecules (ISSN 1420-3049). This special issue belongs to the section "Medicinal Chemistry" Molecules | Special Issue : Heterocycles in Medicinal Chemistry (mdpi.com)
Friday, 19 May 2023
Halogens in Drug discovery
Wednesday, 17 May 2023
Chiral Alkyl Halides in Drug Discovery
Sunday, 14 May 2023
TriFluoro compounds in drug discovery
Monday, 1 May 2023
Just learned about #PROTACs, a promising new class of drugs that target #protein degradation! Exciting times in the world of drug discovery. ๐งช๐ https://t.co/kc3jsYoms5
Just learned about #PROTACs, a promising new class of drugs that target #protein degradation! Exciting times in the world of drug discovery. ๐งช๐ https://t.co/kc3jsYoms5
— Girinath G. Pillai (@giribio) May 1, 2023
from Twitter https://twitter.com/giribio
May 01, 2023 at 04:00AM
Saturday, 1 April 2023
Don't be afraid to take risks and make mistakes. Learn it, Try it, Train it and Deploy it That's how we grow and learn in computational chemistry! #motivation #research #compchem #chemistry https://t.co/vEtB0medFR
Don't be afraid to take risks and make mistakes. Learn it, Try it, Train it and Deploy it That's how we grow and learn in computational chemistry! #motivation #research #compchem #chemistry https://t.co/vEtB0medFR
— Girinath Pillai (@giribio) Apr 1, 2023
from Twitter https://twitter.com/giribio
April 01, 2023 at 04:00AM
Friday, 31 March 2023
Species translation in protein structures refers to the process of aligning the amino acid sequences of two proteins from different species before performing molecular docking studies. https://t.co/4xUyVba2yC
Species translation in protein structures refers to the process of aligning the amino acid sequences of two proteins from different species before performing molecular docking studies. https://t.co/4xUyVba2yC
— Girinath Pillai (@giribio) Mar 31, 2023
from Twitter https://twitter.com/giribio
March 31, 2023 at 02:00AM
Monday, 27 March 2023
Insulin is a protein that is easily broken down by digestive enzymes in the stomach before it can be absorbed into the bloodstream. This makes it difficult for insulin to be absorbed effectively if it is taken orally, which is why it must be injected. #informative #researchideas https://t.co/gCkhm7LbU3
Insulin is a protein that is easily broken down by digestive enzymes in the stomach before it can be absorbed into the bloodstream. This makes it difficult for insulin to be absorbed effectively if it is taken orally, which is why it must be injected. #informative #researchideas https://t.co/gCkhm7LbU3
— Girinath Pillai (@giribio) Mar 27, 2023
from Twitter https://twitter.com/giribio
March 27, 2023 at 07:00AM
Saturday, 25 March 2023
Tautomers are different forms of a compound that exist in equilibrium with each other. They can affect the binding of a compound to a protein target because different tautomers have different chemical properties that can affect how well they interact with the protein. #medchem https://t.co/4c5bwIvA0S
Tautomers are different forms of a compound that exist in equilibrium with each other. They can affect the binding of a compound to a protein target because different tautomers have different chemical properties that can affect how well they interact with the protein. #medchem https://t.co/4c5bwIvA0S
— Girinath Pillai (@giribio) Mar 25, 2023
from Twitter https://twitter.com/giribio
March 25, 2023 at 03:00AM
Wednesday, 15 March 2023
#UKQSAR interesting talks #data #ml #ai #compchem #drugdiscovery #cheminformatics #qsar #API https://t.co/IKGuskyrMV
#UKQSAR interesting talks #data #ml #ai #compchem #drugdiscovery #cheminformatics #qsar #API https://t.co/IKGuskyrMV
— Girinath Pillai (@giribio) Mar 15, 2023
from Twitter https://twitter.com/giribio
March 15, 2023 at 06:03AM
Tuesday, 14 March 2023
RT @NilsWeskamp: PostDoc opportunity at the interface of academia (Val Gillet, Sheffield) and industry: de novo design, chemical synthesis & evolutionary optimization. Please take a look or share: https://t.co/j9OqzAP5kA
RT @NilsWeskamp: PostDoc opportunity at the interface of academia (Val Gillet, Sheffield) and industry: de novo design, chemical synthesis & evolutionary optimization. Please take a look or share: https://t.co/j9OqzAP5kA
— Girinath Pillai (@giribio) Mar 14, 2023
from Twitter https://twitter.com/giribio
March 14, 2023 at 06:57AM
Thursday, 9 March 2023
RT @MatthiasRarey: This years program of GRC Computer-Aided Drug Design Conference (Mt.Snow, July 16-21/23) just published: https://t.co/42NoAVXnnH
RT @MatthiasRarey: This years program of GRC Computer-Aided Drug Design Conference (Mt.Snow, July 16-21/23) just published: https://t.co/42NoAVXnnH
— Girinath Pillai (@giribio) Mar 9, 2023
from Twitter https://twitter.com/giribio
March 09, 2023 at 09:55PM